rs11204998 chr1:152393179 A>C
- Sequence
tgagataaacaacgccctttgtta[A/C]gtgaaggtgtgactgaatttttta
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CREB1_HUMAN FOXA1_HUMAN GATA3_HUMAN EZH2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -3.00 | 2.54 | 2.25 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.40 | 1.63 | 2.59 | n/a | No Hit | |||
| GATA3_HUMAN | -1.34 | 1.32 | 2.67 | n/a | No Hit | |||
| EZH2_HUMAN | -0.70 | 2.47 | 2.00 | n/a | n/a | |||
| NFIB_HUMAN | n/a | 1.49 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP barnes akathisia rating scale, hdl cholesterol, parkinsons disease, total cholesterol, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid