rs112103337 chr11:66718659 C>T
- Sequence
gttacagagcccagggcccagagt[C/T]catgctccccgctggcagggggcc
- ASB in cell types
- IPSC-derived bipolar neuron Peyer's patch bipolar neuron esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN HNF4A_HUMAN PRGR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.05 | 1.75 | 1.24 | 0.14 | Weak Concordant | |||
| HNF4A_HUMAN | 2.45 | -2.87 | 1.33 | -1.16 | Weak Concordant | |||
| PRGR_HUMAN | 1.43 | -0.77 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Nucleus_accumbens_basal_ganglia, Colon_Sigmoid, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Testis, Thyroid