rs11229868 chr11:59186302 C>A
- Sequence
ggtgttctggggattggattattt[C/A]ctggttggccagattgggtgtgga
- ASB in cell types
- K562 (myelogenous leukemia) HT29 (colon adenocarcinoma) foreskin keratinocyte bronchial epithelial cells
- ASB for transcription factors
- CTCF_HUMAN GRHL2_HUMAN PPARG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.66 | 0.35 | 1.52 | n/a | No Hit | |||
| GRHL2_HUMAN | 1.42 | -0.58 | 1.33 | n/a | No Hit | |||
| PPARG_HUMAN | 2.19 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, bipolar disorder, crohns disease, combined control dataset, gender differentiated, cystatin c in serum, ldl cholesterol change with statins, rheumatoid arthritis, total cholesterol change with statins
GTEx eQTL Artery_Tibial, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Muscularis, Nerve_Tibial, Pancreas