rs11238890 chr10:44173778 A>T
- Sequence
gaggattgccaggcctccagggtc[A/T]gatgctttaagacaagcacacgta
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor tissue
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN COT2_HUMAN TF65_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.76 | -0.40 | 1.80 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.16 | 0.64 | 1.94 | n/a | No Hit | |||
| COT2_HUMAN | 1.62 | -2.20 | 1.50 | -5.56 | Concordant | |||
| TF65_HUMAN | 2.10 | -2.75 | 2.00 | n/a | No Hit | |||
| EP300_HUMAN | 1.72 | -2.01 | 1.50 | n/a | n/a |
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Motif analysis
