rs11252861 chr10:4982202 T>C
- Sequence
tgtgataaggaatgctgaaaacgg[T/C]ctcctgagaatgcggtttgagtgc
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) Jurkat (T-cells) heart left ventricle
- ASB for transcription factors
- MTG16_HUMAN MYB_HUMAN TAL1_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTG16_HUMAN | n/a | 0.54 | 2.00 | n/a | n/a | |||
| MYB_HUMAN | 1.72 | -0.93 | 1.50 | 0.40 | Weak Discordant | |||
| TAL1_HUMAN | -0.79 | 1.12 | 2.00 | n/a | No Hit | |||
| SMC3_HUMAN | 0.92 | -0.27 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 0.91 | -0.22 | 1.87 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood