rs11264341 chr1:155179017 C>T
- Sequence
gccctgtctcccttctgccttctt[C/T]aggcgcttgcgtaatcctggccct
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) periferal blood macrophages
- ASB for transcription factors
- KAISO_HUMAN TF65_HUMAN SP130_HUMAN COT2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KAISO_HUMAN | -3.38 | 2.47 | 1.75 | n/a | No Hit | |||
| TF65_HUMAN | -3.87 | 2.10 | 2.50 | n/a | No Hit | |||
| SP130_HUMAN | -1.81 | 1.87 | 1.33 | n/a | n/a | |||
| COT2_HUMAN | 0.43 | 1.04 | 1.70 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, gout, ldl cholesterol, serum creatinine, serum magnesium, serum urate, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood