rs113680823 chr17:82037444 A>G
- Sequence
ctcgcagcgctgggacccggcggg[A/G]cctacctcgcggacaaggctgtca
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) MM1.S (plasma cell myeloma) GM12878 (female B-cells)
- ASB for transcription factors
- LMBL2_HUMAN HDAC1_HUMAN CTCF_HUMAN EGR1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LMBL2_HUMAN | n/a | 2.66 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | -0.29 | 1.93 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.77 | 0.46 | 1.41 | n/a | No Hit | |||
| EGR1_HUMAN | 0.31 | 1.63 | 1.88 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Uterus, Whole_Blood