rs1143146 chr6:29942581 C>G
- Sequence
gccgtcatggcgccccgaaccctc[C/G]tcctgctactctcgggggccctgg
- ASB in cell types
- A549 (lung carcinoma) HCT-116 (colon carcinoma) GM12878 (female B-cells) LNCaP (prostate carcinoma)
- ASB for transcription factors
- JUN_HUMAN FOXK2_HUMAN CTCF_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.21 | -0.47 | 1.07 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.90 | -1.70 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.43 | 1.07 | 1.40 | n/a | No Hit | |||
| CREB1_HUMAN | 0.96 | -0.40 | 1.33 | n/a | No Hit | |||
| ZFX_HUMAN | 1.69 | -0.49 | 1.33 | n/a | No Hit |
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