rs11467 chr8:38787396 A>G
- Sequence
aggggaggaggccgaggaggacgc[A/G]gcgccggctgccggcgggaggaag
- ASB in cell types
- epithelial cell of prostate OVCAR8 (high grade ovarian serous adenocarcinoma) thymus-derived CD34- cells neutrophils
- ASB for transcription factors
- CTCF_HUMAN CTCFL_HUMAN BC11B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.73 | -0.22 | 1.47 | 0.14 | Weak Discordant | |||
| CTCFL_HUMAN | 2.05 | n/a | 1.33 | 0.07 | Weak Discordant | |||
| BC11B_HUMAN | 1.16 | n/a | 2.50 | n/a | n/a |
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Motif analysis
