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rs11475 chr3:195543189 A>G

Sequence
ggctaccgcagcggttgtcacgac[A/G]caacgaccccgacgccagagccaa
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
TAL1_HUMAN CLOCK_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TAL1_HUMAN 1.83 -1.46 0.011.00 1.33 n/a No Hit
CLOCK_HUMAN 1.97 -2.50 0.031.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum Artery_Aorta Artery_Tibial Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Lung Muscle_Skeletal Nerve_Tibial Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Testis Whole_Blood

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