rs114982608 chr1:941767 G>A
- Sequence
gaagggaggggccgcctgaggccc[G/A]agtccctgcccggccgctgagccc
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) K562 (myelogenous leukemia)
- ASB for transcription factors
- GLIS1_HUMAN ZFX_HUMAN BC11A_HUMAN ZN629_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS1_HUMAN | -0.22 | 2.16 | 2.00 | n/a | n/a | |||
| ZFX_HUMAN | 0.01 | 1.08 | 1.57 | 0.16 | Weak Concordant | |||
| BC11A_HUMAN | n/a | 2.24 | 2.00 | n/a | No Hit | |||
| ZN629_HUMAN | -1.87 | 2.22 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood