rs115320070 chr5:109689470 G>A
- Sequence
ctgctcgtggcgggcggtgctgga[G/A]cgccaagtggcgctggagaaccgg
- ASB in cell types
- neural cell upper lobe of left lung Peyer's patch HEK293T (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.77 | 1.79 | 1.18 | 0.59 | Weak Concordant | |||
| SMC3_HUMAN | -1.60 | 1.73 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | -0.17 | 1.02 | 1.17 | n/a | n/a |
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Motif analysis
