rs115447907 chr19:17606519 A>G
- Sequence
ccctgccccgttacttgacctaca[A/G]ccctgtgcttggccgcgcccacag
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- NR2C1_HUMAN NR2C2_HUMAN HDAC1_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR2C1_HUMAN | 3.35 | n/a | 2.00 | 0.86 | Weak Discordant | |||
| NR2C2_HUMAN | 2.53 | n/a | 2.00 | n/a | No Hit | |||
| HDAC1_HUMAN | 1.73 | 0.03 | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | 1.77 | -0.78 | 2.00 | n/a | n/a | |||
| MTA2_HUMAN | 1.76 | -0.42 | 2.00 | n/a | n/a |
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Motif analysis
