rs11558886 chr17:81860384 G>T
- Sequence
gcgcctccgcgaagttgcttttcc[G/T]cagcaccaggacgtggtcctcctc
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) HEK293T (embryonic kidney) CD14+ monocytes
- ASB for transcription factors
- JUN_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.92 | 1.42 | 3.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.94 | -3.87 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid