rs11576111 chr1:173127610 C>T
- Sequence
ccaaattcctatctaagggacctt[C/T]ggaatcacaccctagaaaccatag
- ASB in cell types
- liver
- ASB for transcription factors
- SP1_HUMAN HNF4A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP1_HUMAN | -2.68 | 2.46 | 1.33 | n/a | No Hit | |||
| HNF4A_HUMAN | -2.03 | 1.85 | 1.33 | 3.07 | Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (geographic atrophy), ldl cholesterol