rs11577142 chr1:201538922 T>C
- Sequence
ccatgcctccgcccctctgcgggt[T/C]aaactggcacagtgcagggggagg
- ASB in cell types
- HEK293 (embryonic kidney) cranial neural crest cells
- ASB for transcription factors
- COT1_HUMAN FEZF1_HUMAN WT1_HUMAN AP2A_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 2.14 | n/a | 2.50 | n/a | No Hit | |||
| FEZF1_HUMAN | 2.30 | -3.18 | 2.00 | n/a | No Hit | |||
| WT1_HUMAN | 2.46 | n/a | 2.50 | 0.43 | Weak Discordant | |||
| AP2A_HUMAN | 1.77 | -3.69 | 2.50 | n/a | No Hit | |||
| ZN692_HUMAN | 2.26 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Stomach, Testis, Thyroid, Whole_Blood