rs11582934 chr1:16905295 A>T
- Sequence
tatgttgttgtctcttatttttcc[A/T]aacgtggaaacctctgttttgtaa
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- MNT_HUMAN ZN316_HUMAN ZN143_HUMAN KLF13_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 1.67 | -1.39 | 4.12 | n/a | n/a | |||
| ZN316_HUMAN | 1.05 | n/a | 6.00 | n/a | n/a | |||
| ZN143_HUMAN | 2.54 | n/a | 2.00 | n/a | No Hit | |||
| KLF13_HUMAN | 2.42 | -2.46 | 1.33 | n/a | n/a | |||
| ATF4_HUMAN | 3.56 | n/a | 4.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood