rs11583591 chr1:230106092 T>C
- Sequence
ttaaccacttggtgacacagtgca[T/C]gagggtatgccaactctttttgct
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma) GM12878 (female B-cells) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- JUN_HUMAN BHE40_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.12 | -0.39 | 2.00 | n/a | No Hit | |||
| BHE40_HUMAN | -1.62 | 1.42 | 1.33 | 3.39 | Concordant | |||
| SMC3_HUMAN | 0.81 | -0.37 | 2.06 | n/a | n/a |
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Motif analysis
