rs11589684 chr1:26328446 G>C
- Sequence
ttctccacctcctcttctcccatg[G/C]agggattcctctgcctggaatagg
- ASB in cell types
- keratinocytes
- ASB for transcription factors
- SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 2.50 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, cystatin c in serum, diabetic retinopathy in type 2 diabetes mellitus, refractive error, triglycerides
GTEx eQTL Adipose_Visceral_Omentum, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood