rs11590292 chr1:116879269 C>T
- Sequence
tccggcattgtgctgcaggggtct[C/T]agctggagcagaattgccttcaca
- ASB in cell types
- foreskin keratinocyte RWPE2
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.79 | -1.39 | 1.75 | -1.89 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd