rs11603680 chr11:728230 C>T
- Sequence
gtgagtggccgccaggggtgccct[C/T]gccctggattggtggcagggggca
- ASB in cell types
- K562 (myelogenous leukemia) LNCaP (prostate carcinoma) LNCaP clone FGC pancreas
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN MNT_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.46 | 1.59 | 1.46 | n/a | No Hit | |||
| RAD21_HUMAN | -0.19 | 1.41 | 1.47 | n/a | n/a | |||
| MNT_HUMAN | -1.14 | 1.98 | 2.00 | n/a | n/a | |||
| REST_HUMAN | n/a | 0.87 | 2.00 | n/a | No Hit | |||
| C2D1A_HUMAN | -3.55 | 2.45 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood