rs116057142 chr1:23772274 A>G
- Sequence
ccctggccggctccttacaaaccc[A/G]gctcccttagcaactgcagtttcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RFX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.51 | 1.08 | 2.30 | n/a | No Hit | |||
| RFX1_HUMAN | -1.39 | 1.99 | 2.00 | 2.04 | Concordant |
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Motif analysis
