rs11612715 chr12:52306316 C>A
- Sequence
agacctttccctttcccagccctg[C/A]cagggttctcagtgtgctctgtcc
- ASB in cell types
- VCaP (prostate carcinoma) transverse colon Peyer's patch
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| VCaP (prostate carcinoma) | -0.92 | 1.03 | 1.00 | |||
| transverse colon | 1.52 | -1.57 | 1.00 | |||
| Peyer's patch | 1.16 | -0.94 | 1.17 |
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Motif analysis
No data available
Genetic associations
GRASP acute lung injury following major trauma, aortic valve calcium, autism, autism with verbal ability, bipolar disorder, hdl cholesterol, ldl cholesterol, waist hip ratio
GTEx eQTL Adipose_Visceral_Omentum, Artery_Coronary, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid