rs11628176 chr14:106627121 T>A
- Sequence
ccccgccctccctgcacctgctcc[T/A]gaccgggcctcctgctctgtgggc
- ASB in cell types
- LNCaP (prostate carcinoma) ICN12 (primary pre-B acute lymphomablastic leukemia) 22RV1 (prostate carcinoma) upper lobe of left lung
- ASB for transcription factors
- CTCF_HUMAN PBX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.37 | -0.62 | 1.63 | n/a | No Hit | |||
| PBX1_HUMAN | 2.10 | -4.02 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Liver, Lung, Minor_Salivary_Gland, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood