rs11630347 chr15:62060644 C>T
- Sequence
ttagcttgcgcctgtctcgtcagc[C/T]gtgcacgagaaaaaaaaggacctt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) LNCaP (prostate carcinoma) MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- DACH1_HUMAN FOXK2_HUMAN IKZF1_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| DACH1_HUMAN | n/a | 2.95 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 2.18 | 1.70 | 1.67 | n/a | n/a | |||
| IKZF1_HUMAN | -0.72 | 1.78 | 2.00 | n/a | No Hit | |||
| MNT_HUMAN | -0.27 | 1.49 | 1.83 | n/a | n/a | |||
| CTCF_HUMAN | 0.52 | 0.83 | 1.43 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood