rs11637282 chr15:52100639 G>C
- Sequence
gcaaagcggggcttattcacagga[G/C]tctggtgttggccgttaggtttga
- ASB in cell types
- GM12878 (female B-cells) K562 (myelogenous leukemia)
- ASB for transcription factors
- COT1_HUMAN IKZF2_HUMAN RUNX3_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 3.35 | -0.36 | 2.50 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.61 | -1.82 | 1.67 | n/a | n/a | |||
| RUNX3_HUMAN | 1.78 | n/a | 1.50 | n/a | No Hit | |||
| TBX21_HUMAN | 2.17 | -2.77 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood