rs11640736 chr16:68704421 G>T
- Sequence
gctagcgctcccttggtggaaact[G/T]cacttcccagcaggaggaattccc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) transverse colon
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.97 | 0.11 | 1.76 | n/a | n/a | |||
| SMC3_HUMAN | 0.97 | -0.01 | 1.90 | n/a | n/a | |||
| CTCF_HUMAN | 0.63 | 0.60 | 1.46 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Spleen, Thyroid, Whole_Blood