rs11643304 chr16:88737526 A>C
- Sequence
accggcctccgccccgccccccgc[A/C]cccagccataccttgcagtgtgcg
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) epithelial cell of prostate SH-SY5Y (neuroblastoma)
- ASB for transcription factors
- ZFHX2_HUMAN PATZ1_HUMAN VEZF1_HUMAN KLF9_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFHX2_HUMAN | n/a | 2.66 | 1.50 | n/a | n/a | |||
| PATZ1_HUMAN | -2.37 | 2.16 | 1.50 | 2.08 | Concordant | |||
| VEZF1_HUMAN | 1.58 | n/a | 2.50 | 3.19 | Discordant | |||
| KLF9_HUMAN | n/a | 0.87 | 2.00 | 4.11 | Concordant | |||
| EGR2_HUMAN | -1.82 | 1.98 | 1.50 | 4.12 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid