rs11646758 chr16:88663242 T>C
- Sequence
cgagtcgggcgcacgcattacctc[T/C]cagccaatggacgggatcggacga
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- STAT1_HUMAN NRF1_HUMAN CLOCK_HUMAN SOX6_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.21 | n/a | 2.50 | n/a | No Hit | |||
| NRF1_HUMAN | -2.24 | 1.30 | 2.67 | n/a | No Hit | |||
| CLOCK_HUMAN | 2.30 | -3.26 | 2.00 | n/a | No Hit | |||
| SOX6_HUMAN | n/a | 2.34 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood