rs11651453 chr17:8200377 A>G
- Sequence
taaggaggagacagagagtgcggg[A/G]aaacgtagggggtgtaaaatctct
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZN366_HUMAN PATZ1_HUMAN ZN501_HUMAN PRD10_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN366_HUMAN | 2.64 | n/a | 1.33 | n/a | n/a | |||
| PATZ1_HUMAN | 3.01 | n/a | 1.50 | 2.14 | Discordant | |||
| ZN501_HUMAN | 2.89 | n/a | 2.00 | n/a | n/a | |||
| PRD10_HUMAN | 2.56 | n/a | 2.00 | n/a | n/a | |||
| PRDM9_HUMAN | 2.46 | -2.83 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP hdl cholesterol, hdl cholesterol change with statins, height, infant head circumference, ldl cholesterol, microalbuminuria, total cholesterol, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood