rs1165838 chr19:40570084 T>C
- Sequence
tcctggactccgtatttcttcagc[T/C]cagtggggtcccaaatttcttcat
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- ZN316_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN316_HUMAN | n/a | 1.87 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP longstanding arthritis, primary rhegmatogenous retinal detachment, rheumatoid arthritis, sporadic creutzfeldt-jakob disease
GTEx eQTL Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Whole_Blood