rs11666367 chr19:46617124 A>G
- Sequence
gcccaaaatgtcacggcctctttg[A/G]ggaaaccgcagccatctgttgcgg
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- HTF4_HUMAN BHE40_HUMAN IKZF1_HUMAN SCRT2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HTF4_HUMAN | 2.15 | n/a | 1.33 | n/a | No Hit | |||
| BHE40_HUMAN | 2.07 | -2.11 | 1.33 | n/a | No Hit | |||
| IKZF1_HUMAN | 0.96 | -1.27 | 1.39 | n/a | No Hit | |||
| SCRT2_HUMAN | 2.14 | n/a | 2.00 | n/a | n/a | |||
| IKZF2_HUMAN | 1.01 | -0.42 | 1.33 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Esophagus_Muscularis, Heart_Atrial_Appendage, Spleen, Thyroid, Whole_Blood