rs11666394 chr19:50357351 G>A
- Sequence
cttccgccctagcggttcccaccg[G/A]cctggaatgccgacttgctcgctc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- RAD21_HUMAN FOXK2_HUMAN SMC3_HUMAN MNT_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.90 | 0.06 | 1.50 | n/a | n/a | |||
| FOXK2_HUMAN | 1.47 | -0.70 | 1.78 | n/a | n/a | |||
| SMC3_HUMAN | 0.83 | -0.14 | 1.47 | n/a | n/a | |||
| MNT_HUMAN | 1.70 | -0.37 | 2.12 | n/a | n/a | |||
| SP7_HUMAN | n/a | 2.17 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood