rs11669468 chr19:55259461 A>G
- Sequence
cgcttagccgcctccgagcctcag[A/G]ggccctcagtcgtttccgtctgct
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) monocyte-derived macrophages
- ASB for transcription factors
- ELF1_HUMAN SPI1_HUMAN PRD10_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | 0.40 | 1.22 | 1.68 | n/a | No Hit | |||
| SPI1_HUMAN | -0.38 | 1.86 | 1.97 | n/a | No Hit | |||
| PRD10_HUMAN | -0.87 | 3.46 | 2.00 | n/a | n/a | |||
| REQU_HUMAN | -0.04 | 1.79 | 1.96 | n/a | n/a | |||
| ZBT17_HUMAN | 3.61 | n/a | 4.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood