rs116749252 chr4:52862188 C>T
- Sequence
ggggctccgcactgactccaggcg[C/T]ctccgggggcgtcgcgcgcgcgga
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- EGR1_HUMAN RING2_HUMAN MGAP_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | -2.76 | 2.75 | 2.25 | 0.75 | Weak Concordant | |||
| RING2_HUMAN | n/a | 2.68 | 2.00 | n/a | n/a | |||
| MGAP_HUMAN | n/a | 2.44 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | n/a | 1.81 | 2.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood