rs11681074 chr2:42905980 T>C
- Sequence
gatgcctcctggtgggcagcaggg[T/C]ctcctccgagatagcaccagaaat
- ASB in cell types
- HEK293 (embryonic kidney) SK-N-SH (neuroblastoma) transverse colon
- ASB for transcription factors
- CTCF_HUMAN ZN692_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.32 | 0.98 | 1.35 | n/a | No Hit | |||
| ZN692_HUMAN | n/a | 2.59 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, birth weight, body mass index (bmi), diastolic blood pressure (dbp), fasting blood glucose, homa-b, ldl cholesterol, systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Esophagus_Mucosa, Lung, Nerve_Tibial, Pancreas, Pituitary, Testis