rs11688500 chr2:136379017 C>G
- Sequence
ttggagcaaccttacaaaaagaaa[C/G]cagacatcaagaacccatgttctc
- ASB in cell types
- A549 (lung carcinoma) RH4 (alveolar rhabdomyosarcoma) GM12878 (female B-cells) erythroid cells
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.07 | 1.04 | 1.81 | n/a | n/a | |||
| SMC3_HUMAN | 0.07 | 1.25 | 1.83 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP fasting blood glucose, ldl cholesterol change with statins, total cholesterol change with statins