rs11703936 chr22:46762438 C>A
- Sequence
aggctcctgggagtccgttgcggg[C/A]aggtgggcgccgctgttgtgtcgg
- ASB in cell types
- MDA-MB-453 (breast adenocarcinoma) keratinocytes CD14+ monocytes
- ASB for transcription factors
- SNAI2_HUMAN MYC_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 1.58 | -1.00 | 1.50 | -3.98 | Concordant | |||
| MYC_HUMAN | 2.18 | -1.87 | 2.00 | -4.32 | Concordant | |||
| STAT1_HUMAN | 1.83 | n/a | 2.50 | 3.62 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood