rs11711952 chr3:196528863 G>C
- Sequence
ggtggttccgccctgtcgggctca[G/C]accggcctgggcgcctccgcgggg
- ASB in cell types
- MDA-MB-453 (breast adenocarcinoma) pancreas MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- CTCF_HUMAN MYC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.08 | 0.71 | 1.37 | n/a | No Hit | |||
| MYC_HUMAN | 2.31 | -2.13 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Mucosa, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood