rs1172132 chr1:205273773 A>G
- Sequence
cacctgctctccaggtgctggagc[A/G]tgggcttgagtgtagtgaccaggc
- ASB in cell types
- keratinocytes MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells) K562 (myelogenous leukemia)
- ASB for transcription factors
- SNAI2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 3.26 | n/a | 1.33 | n/a | No Hit | |||
| RAD21_HUMAN | 1.07 | 0.16 | 1.44 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood