ADASTRA v1.6.10
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adastra.autosome.org
rs11740394
chr5:17860895
T
>
A
Sequence
gtgagtcagcatatcagtgactca[T/A]aataactttcataattgagatcat
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
FOS_HUMAN
GATA3_HUMAN
FOXA1_HUMAN
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Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOS_HUMAN
1.71
n/a
8.1·10
-13
1.00
3.00
n/a
n/a
GATA3_HUMAN
1.48
-1.17
7.6·10
-3
0.98
2.67
n/a
No Hit
FOXA1_HUMAN
1.26
-0.97
0.05
1.00
2.83
n/a
No Hit
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Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration (geographic atrophy)
,
total cholesterol
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)