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rs11740394 chr5:17860895 T>A

Sequence
gtgagtcagcatatcagtgactca[T/A]aataactttcataattgagatcat
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
FOS_HUMAN GATA3_HUMAN FOXA1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOS_HUMAN 1.71 n/a 8.1·10-131.00 3.00 n/a n/a
GATA3_HUMAN 1.48 -1.17 7.6·10-30.98 2.67 n/a No Hit
FOXA1_HUMAN 1.26 -0.97 0.051.00 2.83 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy) total cholesterol

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