rs117525671 chr6:34224197 C>T
- Sequence
ggaaggggctttcggagctgcagt[C/T]gaatcgcagggaaagagaaagtgt
- ASB in cell types
- HepG2 (hepatoblastoma) HAEC (human aortic endothelial cells) CD14+ monocytes PC3 (prostate carcinoma)
- ASB for transcription factors
- TF65_HUMAN STAT1_HUMAN ANDR_HUMAN JUN_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | -2.27 | 2.40 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.61 | n/a | 2.50 | n/a | No Hit | |||
| ANDR_HUMAN | 1.51 | -1.22 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | -2.84 | 2.17 | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | 1.81 | -3.74 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Liver, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg