rs117731179 chr11:83820100 A>T
- Sequence
agtatgaaaactgggcaaaaggcc[A/T]cattccactagtgtctccagttca
- ASB in cell types
- foreskin keratinocyte HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN PPARG_HUMAN RXRB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.86 | 0.21 | 1.65 | n/a | No Hit | |||
| PPARG_HUMAN | 2.18 | -2.42 | 1.33 | -3.45 | Concordant | |||
| RXRB_HUMAN | 1.90 | -1.70 | 1.33 | n/a | No Hit |
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Motif analysis
