rs11774998 chr8:58636784 C>G
- Sequence
gcccaagggctgtagtttgccaag[C/G]cctgctgtgaatccattcttccat
- ASB in cell types
- VCaP (prostate carcinoma) CWR22 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN HXB13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.74 | -0.15 | 1.76 | n/a | No Hit | |||
| HXB13_HUMAN | 1.54 | 2.49 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, college completion, ldl cholesterol, total cholesterol, triglycerides change with statins
GTEx eQTL Artery_Aorta, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Pancreas, Prostate, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood