rs11778573 chr8:133216687 T>G
- Sequence
aatgaagctgggtcaggcctgagg[T/G]cagtgtggtttggtggaaggatta
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- FOXA2_HUMAN ANDR_HUMAN IKZF2_HUMAN NR2F6_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 2.23 | n/a | 1.33 | n/a | No Hit | |||
| ANDR_HUMAN | 0.40 | 1.30 | 1.64 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.17 | -2.17 | 1.33 | n/a | n/a | |||
| NR2F6_HUMAN | 1.93 | -2.10 | 1.33 | n/a | n/a | |||
| COT2_HUMAN | 1.80 | 0.36 | 1.42 | -2.83 | Concordant |
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Motif analysis
