rs11787175 chr8:120084763 T>C
- Sequence
ctgagtcagcatttatttgtaatg[T/C]tatgaaatgctgcccccttgtgtt
- ASB in cell types
- A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte
- ASB for transcription factors
- SMC3_HUMAN CTCF_HUMAN CREB1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 1.30 | -0.14 | 1.86 | n/a | n/a | |||
| CTCF_HUMAN | 0.64 | 0.58 | 1.48 | n/a | No Hit | |||
| CREB1_HUMAN | -0.93 | 1.92 | 1.61 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid