rs11803622 chr1:44731005 C>T
- Sequence
gttcaaacaaaatgttgtctcaca[C/T]ctcgcaacaaacacacaactttct
- ASB in cell types
- HepG2 (hepatoblastoma) BEAS-2B (bronchial epithelium) breast tumor tissue HCT-116 (colon carcinoma)
- ASB for transcription factors
- NDF1_HUMAN TBX3_HUMAN MAF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NDF1_HUMAN | 1.08 | 0.00 | 1.42 | n/a | No Hit | |||
| TBX3_HUMAN | 1.69 | -0.98 | 1.33 | -5.56 | Concordant | |||
| MAF_HUMAN | 1.31 | n/a | 2.50 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood