rs118067188 chr6:166313478 G>A
- Sequence
agcacacgcttccctccatgccgg[G/A]gggggggggtcccaatttctttgg
- ASB in cell types
- K562 (myelogenous leukemia) human cardiac myocytes IPSC-derived bipolar neuron stem and progenitor cells
- ASB for transcription factors
- CTCF_HUMAN MGAP_HUMAN SMCA4_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.07 | 1.31 | 1.11 | 0.23 | Weak Concordant | |||
| MGAP_HUMAN | n/a | 0.94 | 1.33 | n/a | n/a | |||
| SMCA4_HUMAN | -1.60 | 2.40 | 1.33 | n/a | n/a | |||
| MNT_HUMAN | -0.63 | 1.93 | 1.33 | n/a | n/a | |||
| LMBL2_HUMAN | -1.01 | 1.01 | 1.00 | n/a | n/a |
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Motif analysis
