rs11818984 chr10:122102774 G>A
- Sequence
gcagacctggcttgtgtgaactgg[G/A]ctctgtgtgccctcagggaaaatg
- ASB in cell types
- A549 (lung carcinoma) SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- GCR_HUMAN JUN_HUMAN EP300_HUMAN AP2C_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -1.35 | 2.78 | 2.08 | 3.90 | Concordant | |||
| JUN_HUMAN | -1.61 | 2.28 | 2.00 | n/a | No Hit | |||
| EP300_HUMAN | n/a | 2.56 | 3.50 | n/a | n/a | |||
| AP2C_HUMAN | 1.82 | -1.67 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Nerve_Tibial