rs11826681 chr11:30323336 G>C
- Sequence
gaggaggcccgcacacgtgagggg[G/C]atttccagctgctggccggggcct
- ASB in cell types
- GM12878 (female B-cells) HEK293 (embryonic kidney) IMR90 (lung fibroblasts) Th1-cells
- ASB for transcription factors
- RELB_HUMAN USF2_HUMAN RAD51_HUMAN MEF2B_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RELB_HUMAN | 2.32 | n/a | 1.33 | -8.24 | Concordant | |||
| USF2_HUMAN | 1.99 | -2.03 | 1.33 | -0.14 | Weak Concordant | |||
| RAD51_HUMAN | 1.71 | -1.98 | 1.33 | n/a | n/a | |||
| MEF2B_HUMAN | 1.92 | -2.15 | 1.33 | n/a | No Hit | |||
| BHE40_HUMAN | 0.83 | -0.23 | 1.61 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_EBV-transformed_lymphocytes, Heart_Left_Ventricle, Lung, Nerve_Tibial, Spleen, Testis, Thyroid, Whole_Blood